PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8969_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 849aa    MW: 94032.8 Da    PI: 5.5417
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8969_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.4e-191552302299
                 H.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  22 faeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+++     ++ +++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l+v+v+r+
  RrC8969_p1 155 FCKTLtA-TQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLMVGVRRA 230
                 5555542.3333459************************************************..4577778*****97 PP

2Auxin_resp109.73.1e-36255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F +++nPra+++eFv++++k++ka+  +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+
  RrC8969_p1 255 AAHATANRTPFLIFFNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 338
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-25146258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-26151243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-13154229No hitNo description
SMARTSM010191.1E-11155231IPR003340B3 DNA binding domain
PfamPF023622.6E-16155230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251168231IPR003340B3 DNA binding domain
PfamPF065074.7E-31255338IPR010525Auxin response factor
PfamPF023095.4E-9729829IPR033389AUX/IAA domain
PROSITE profilePS5174522.909743827IPR000270PB1 domain
SuperFamilySSF542776.96E-7757821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MSSFACVEDK MKTNGLVNGG GTTATSQSSL LEEMKLLKDQ SGTRKPVINS MLWHACAGPL  60
VSLPQVGSLV YYFSQGHSEQ VSVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE  120
IYAQMSLQPV HSERDVLPVP DFGLLRGSKH PSEYFCKTLT ATQPPTQELV VRDLHENTWT  180
FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLMVGVRRA NRQQTALPSS  240
VLSADSMHIG VLAAAAHATA NRTPFLIFFN PRACPAEFVI PLAKYRKAIC GSQLSVGMRF  300
GMMFETEDSG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCNDKP TRVSPWDIET  360
PESLFIFPSL TSGLKRQLHP SYFAGETEWG SLIKRPLTNG VVPYASFPNM ASEQLMKMMM  420
MRPHGNQNAV TSFMSEMQQN VVMGHGGCLL GDVNMQQQPM VMNQVVQNNN PSVSNTSGQE  480
QNLSQSMNAP TNTESSSGRV NHGNKEQSIE QARVCNEEKV NELIQKPSGL SPLQAADPCP  540
EQIYPTQQSD PVNGFSFLET EELTSQVSSF QSLAGSYKQP LMLSSNESSP VVLPDSTNSP  600
LFQDVWDNQL NGLKFDQFSP WMQQDLYGGC QNMCMSNSTN SNILDPPPLS NTVLDDFCAI  660
KETEFNCLVG NNNNNNNNSF AQDVQSQITS ASFAESQALS RQDNSGGTGG TSSSNVDFDD  720
TSLLQQQNNS KGSWQKLATP RVRTYTKVQK TGSVGRSIDV TSFRDYEELK SAIECMFGLE  780
GLLTRPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI KILSPTEVQQ MSEEGMKLLN  840
SACINDLKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013632392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794660.0JN979466.1 Brassica rapa subsp. pekinensis auxin response factor 5-2 (ARF5-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013729454.10.0PREDICTED: auxin response factor 5-like
RefseqXP_013729455.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A0D3DQG90.0A0A0D3DQG9_BRAOL; Auxin response factor
STRINGBra016492.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein